User Tools

Site Tools


bend:pdb_example

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revision Previous revision
Next revision
Previous revision
bend:pdb_example [2020/03/24 17:58]
fsilesc
bend:pdb_example [2020/03/24 18:02] (current)
fsilesc
Line 4: Line 4:
 REMARK records can contain free-form annotation, but they also accommodate standardized information; for example, the REMARK 350 BIOMT records describe how to compute the coordinates of the experimentally observed multimer from those of the explicitly specified ones of a single repeating unit. REMARK records can contain free-form annotation, but they also accommodate standardized information; for example, the REMARK 350 BIOMT records describe how to compute the coordinates of the experimentally observed multimer from those of the explicitly specified ones of a single repeating unit.
  
-SEQRES records give the sequences of the three peptide chains (named A, B and C), which are very short in this example but usually span multiple lines.+SEQRES records give the sequences of the three peptide chains (named A, B and C), and usually span multiple lines.
  
-ATOM records describe the coordinates of the atoms that are part of the protein. For example, the first ATOM line above describes the alpha-N atom of the first residue of peptide chain A, which is a proline residue; the first three floating point numbers are its x, y and z coordinates and are in units of Ångströms.[3] The next three columns are the occupancy, temperature factor, and the element name, respectively.+ATOM records describe the coordinates of the atoms that are part of the protein. For example, the first ATOM line above describes the alpha-N atom of the first residue of peptide chain A, which is a proline residue; the first three floating point numbers are its x, y and z coordinates and are in units of Ångströms. The next three columns are the occupancy, temperature factor, and the element name, respectively.
  
 HETATM records describe coordinates of hetero-atoms, that is those atoms which are not part of the protein molecule. HETATM records describe coordinates of hetero-atoms, that is those atoms which are not part of the protein molecule.
bend/pdb_example.1585072708.txt.gz · Last modified: 2020/03/24 17:58 by fsilesc