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bend:docking [2020/03/24 17:39]
fsilesc
bend:docking [2020/03/24 19:12] (current)
fsilesc
Line 24: Line 24:
   * http://link.fyicenter.com/out.php?ID=569   * http://link.fyicenter.com/out.php?ID=569
   * https://en.wikipedia.org/wiki/Chemical_file_format#Protein_Data_Bank_Format   * https://en.wikipedia.org/wiki/Chemical_file_format#Protein_Data_Bank_Format
-  *  
  
 ===== PDBQT ===== ===== PDBQT =====
 +
 +PDBQT format is very similar to PDB format but it includes partial charges ('Q') and AutoDock 4 (AD4) atom types ('T'). There is one line for each atom in the ligand, plus special keywords indicating which atoms, if any, are to be flexible during the AutoDock experiment.
 +
 +[[bend:pdbqt_example|bend:pdbqt_example]]
 +
 +  * https://www.mdanalysis.org/docs/documentation_pages/coordinates/PDBQT.html
 +  * http://autodock.scripps.edu/faqs-help/faq/what-is-the-format-of-a-pdbqt-file
  
 ====== File Conversion ====== ====== File Conversion ======
  
 https://en.wikipedia.org/wiki/Chemical_file_format#Converting_Between_Formats https://en.wikipedia.org/wiki/Chemical_file_format#Converting_Between_Formats
 +
 ====== SDF to PDB ====== ====== SDF to PDB ======
  
bend/docking.1585071569.txt.gz · Last modified: 2020/03/24 17:39 by fsilesc